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Software, Libraries, etc.

Revision History:
Revision 2.26, Published 2007/09/13 11:56:22 (UTC) by Gerd Brand

Abstract

This document lists online documentation of system and application software available at HLRN. This list will be extended as soon as the software is available for public use.

Note

If you cannot locate a particular software product (commercial, open source etc.) on the HLRN system please mail your suggestions and requirements to your local HLRN support person or to .

1. Engineering

  • ABAQUS - A Finite Element Analysis Package for Engineering Applications

  • FLUENT - A Package for Computational Fluid Dynamics Simulations

  • CFX - A Package for Computational Fluid Dynamics Simulations

  • COMET - COntinuum Mechanics Engineering Tool

  • STAR-CD - A Package for Computational Fluid Dynamics Simulations

  • ANSYS - A Package for Coupled Physics Simulations

2. Quantum Chemistry, Molecular Modeling

  • CPMD - A plane wave/pseudopotential implementation of Density Functional Theory, designed for ab-initio molecular dynamics.

  • Quantum-ESPRESSO - opEn-Source Package for Research in Electronic Structure, Simulation, and Optimization, including PWscf, CP, and tools.

  • GAMESS-UK - A general purpose ab initio molecular electronic structure program for performing SCF-, DFT- and MCSCF-gradient calculations, together with a variety of techniques for post Hartree Fock calculations.

  • Gaussian 03 - A connected system of programs for performing a variety of semiempirical and ab initio molecular orbital calculations.

  • Gaussian 98 - A connected system of programs for performing a variety of semiempirical and ab initio molecular orbital calculations.

  • GROMACS - A versatile package to perform molecular dynamics, primarily designed for biochemical molecules.

  • MOLPRO - A system of ab initio programs for molecular electronic structure calculations, with the emphasis on highly accurate computations.

  • NAMD - A parallel, object-oriented molecular dynamics code designed for high-performance simulation of large biomolecular systems.

  • NWChem - A computational chemistry package that is designed to run on high-performance parallel supercomputers as well as conventional workstation clusters.

  • TURBOMOLE - A program package for ab initio electronic structure calculations.

3. Visualisation

  • Animation - Animation of image sequences

  • FERRET - An interactive computer visualization and analysis environment.

  • GrADS - The Grid Analysis and Display System program.

  • Ncview - Ncview: a netCDF visual browser

  • NCL - NCL: Language for Data Processing and Visualisation

  • Grace - a WYSIWYG 2D plotting tool for numerical data.

  • Tachyon - a Parallel / Multiprocessor Ray Tracing System.

  • Viewmol - an open source graphical front end for computational chemistry programs.

  • VMD - A molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting.

4. Numerics

  • ATLAS - A set of empirically tuned libraries that provide a complete BLAS API for both C and Fortran77, and the LAPACK API.

  • Aztec - A Massively Parallel Iterative Solver Library for Solving Sparse Linear Systems

  • ESSL and Extensions - ESSL extensions installed at HLRN

  • FFTW - The "Fastest Fourier Transform in the West"

  • FoSSI - Family of Simplified Solver Interfaces

  • GSL - The GNU Scientific Library.

  • Hypre - High Performance Preconditioners

  • LAPACK - Linear Algebra PACKage

  • MASS - The Mathematical Acceleration Subsystem from the IBM HPC Toolkit

  • NAG Fortran Library

  • PeIGS - Parallel Eigensystem Solver

  • PETSC - The Portable, Extensible Toolkit for Scientific Computation

  • Metis - Graph partitioning and sparse matrix ordering

5. Programming: Development and Tools

6. Miscellaneous

  • Global Arrays - A toolkit providing a portable "shared-memory" programming interface for distributed-memory computers.

  • The netCDF Operators (NCO) - A suite of programs to manipulate netCDF-files and HDF files

  • netCDF - A library to read and write netCDF-formatted data in FORTRAN and C programs.

  • UDUNITS - A library for manipulating units of physical quantities

  • Perl - HLRN has different Perl distributions installed.

  • Python - HLRN has different Python distributions installed.

  • HLRN Software Distribution - Miscellaneous Applications and Libraries in /class or /sw/ppc

The following software (programs, libraries, tools etc.) is available for use but it is not yet documented. To use it see the respective modulefile - A tool to set up the environment for system and application software., contact your HLRN support person, or mail at (HLRN Support).

  • ARPACK (Numerics))
  • BLACS (Numerics)
  • EnSight (Visualisation)
  • Euclid (Numerics)
  • MPItrace (MPI Trace Library, from the IBM HPC Toolkit)
  • MUMPS (Numerics)
  • PARMS (Numerics)
  • PeekPerf (Performance Vizualization Tool, from the IBM HPC Toolkit)
  • POMP (OpenMP Performance Analyzer, from the IBM HPC Toolkit)
  • RAMG (Numerics)
  • ScaLAPack (Numerics)
  • SiGMA (SImulation Guided Memory Analyzer, from the IBM HPC Toolkit)
  • SuperLU (Numerics)
  • Trace Analyzer and Collector (a.k.a. VaMPIR and VaMPIRtrace, Performance Tool)
  • TurboSHMEM (Communication Library, from the IBM HPC Toolkit)
  • TurboMPI (Communication Library, from the IBM HPC Toolkit)
  • UMFPACK (Numerics)
  • WSMP (Watson Sparse Matrix Package, from the IBM HPC Toolkit)



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